BioVitrina web repository — access to data on bioresource collections
https://doi.org/10.15829/1728-8800-2023-3720
Abstract
Aim. To develop the BioVitrina web repository for visualizing data on biological samples available in the organization (https://bb.ibmc.msk.ru).
Material and methods. The following set of tools was used: PostgreSQL 12, Python 3.8 scripting language, Django 3.2.7, Angular 12.2.13, Nginx, Docker 3, Redis 6.
Results. Biological samples are systematized according to the International Classification of Diseases, 10th revision (ICD-10). After selecting the most suitable biosamples, the User has the opportunity to submit a request for their receipt. A necessary condition for obtaining biological samples is the subsequent publication of the results of experimental studies in the BioVitrina web repository. Such an exchange of analytical research results will avoid repetition of similar studies and will contribute to the conservation of material resources.
Conclusion. "BioVitrina" was developed to optimize the infrastructure of biobanks of organizations and ensure the availability of information about their existing bioresource collections. This will solve many issues related to the use of different types of biomaterials, both for research and clinical purposes in personalized biomedicine.
About the Authors
A. S. Bukreeva
V.N. Orekhovich Research Institute of Biomedical Chemistry
Russian Federation
Moscow
K. A. Malsagova
V.N. Orekhovich Research Institute of Biomedical Chemistry
Russian Federation
Moscow
A. A. Izotov
V.N. Orekhovich Research Institute of Biomedical Chemistry
Russian Federation
Moscow
A. V. Lisitsa
V.N. Orekhovich Research Institute of Biomedical Chemistry
Russian Federation
Moscow
A. L. Kaisheva
V.N. Orekhovich Research Institute of Biomedical Chemistry
Russian Federation
Moscow
References
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4. Mitchell C, Gramatiuk S, Sarkisian T, et al. Biobanking IT Systems, Database Structure and Web Applications. In: Sargsyan K, Huppertz B, Gramatiuk S, ed. Biobanks in Low and Middle Income Countries: Relevance, Setup and Management. Springer, Cham. 2022. pp. 8189. https://doi.org/10.1007/9783030876371_12.
5. Meshkov AN, Yartseva OYu, Borisova AL, et al. The concept of the national information platform of biobanks of the Russian Federation. Cardiovascular Therapy and Prevention. 2022;21(11):3417. (In Russ.) https://doi.org/10.15829/1728880020223417.
Supplementary files
What is already known about the subject?
- Biobank (biorepository) is an organized collection of biological material and related data, stored in accordance with standard operating procedures.
- The creation of virtual collections will provide access to data on the activities of the biobank and the biological collections it contains, as well as the conditions for obtaining biological samples for research.
What might this study add?
- The BioVitrina web platform is designed to visualize information about biological samples available in the organization.
- BioVitrina combines a growing database of biospecimens annotated by clinical, anthropometric and biochemical parameters and the results of analytical studies.
For citations:
Bukreeva A.S.,
Malsagova K.A.,
Izotov A.A.,
Lisitsa A.V.,
Kaisheva A.L.
BioVitrina web repository — access to data on bioresource collections. Cardiovascular Therapy and Prevention. 2023;22(11):3720.
(In Russ.)
https://doi.org/10.15829/1728-8800-2023-3720
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