Preview

Cardiovascular Therapy and Prevention

Advanced search

Inventory and quality control of biosample collection from pregnant women at different gestational ages to search for early biomarkers of pregnancy complications

https://doi.org/10.15829/1728-8800-2023-3740

Abstract

Aim. To conduct an inventory and quality control of biosample collection from pregnant women at different gestational ages to search for early biomarkers of pregnancy complications.

Material and methods. In this work, methods for assessing the sample preparation of biosamples were used, including the isolation of deoxyribonucleic acid (DNA)/ribonucleic acid from various biomaterials, polyacrylamide gel electrophoresis of protein, and database analysis.

Results. Inventory and quality control of the collection (n=18390) was carried out, which confirmed the high safety of the biomaterial, regardless of storage period. The mean concentration of DNA was 69,96±6,56 ng/µl, extracellular DNA (ecDNA) — 0,20±0,02 ng/µl, ribonucleic acid — 38,16±5,69 ng/µl. DNA Integrity Number (DIN) >9, RNA integrity number (RIN) >7, A260/280 >1,8 were for all studied samples. Protein electrophoresis demonstrated no degradation of protein zones after longterm storage. The number of errors detected during the inventory was 84 (0,46% of all records in the database), while there were 64 donors with incomplete clinical information (15% of all donors in the collection).

Conclusion. The necessity of mandatory implementation of standard operating procedures when creating and maintaining a collection, on the one hand, and periodic inventory with biosample quality assessment, on the other, has been demonstrated.

About the Authors

A. R. Maltseva
D.O. Ott Research Institute of Obstetrics, Gynecology and Reproductology
Russian Federation

St. Petersburg



R. A. Illarionov
D.O. Ott Research Institute of Obstetrics, Gynecology and Reproductology; Saint­ Petersburg State University
Russian Federation

St. Petersburg



E. S. Vashukova
D.O. Ott Research Institute of Obstetrics, Gynecology and Reproductology
Russian Federation

St. Petersburg



O. V. Pachulia
D.O. Ott Research Institute of Obstetrics, Gynecology and Reproductology
Russian Federation

St. Petersburg



T. B. Postnikova
D.O. Ott Research Institute of Obstetrics, Gynecology and Reproductology
Russian Federation

St. Petersburg



M. E. Velizhanina
Saint­ Petersburg State University
Russian Federation

St. Petersburg



A. A. Rubel
Saint­ Petersburg State University
Russian Federation

St. Petersburg



Yu. A. Nasykhova
D.O. Ott Research Institute of Obstetrics, Gynecology and Reproductology
Russian Federation

St. Petersburg



O. N. Bespalova
D.O. Ott Research Institute of Obstetrics, Gynecology and Reproductology
Russian Federation

St. Petersburg



A. S. Glotov
D.O. Ott Research Institute of Obstetrics, Gynecology and Reproductology; Saint­ Petersburg State University
Russian Federation

St. Petersburg



References

1. Anisimov SV, Meshkov AN, Glotov AS, et al. National Association of Biobanks and Biobanking Specialists: New Community for Promoting Biobanking Ideas and Projects in Russia. Biopreserv Biobank. 2021;19(1):73­82. doi:10.1089/bio.2020.0049.

2. Sivakova OV, Pokrovskaya MS, Efimova IA, et al. Quality control of serum and plasma samples for scientific research. Profi lakticheskaya Meditsina. 2019;22(5):91­7. (In Russ.) doi:10.17116/profmed20192205191.

3. Chen WC, Kerr R, May A, et al. The Integrity and Yield of Genomic DNA Isolated from Whole Blood Following Long­ Term Storage at ­30о C. Biopreserv Biobank. 2018;16(2):106­13. doi:10.1089/bio.2017.0050.

4. Shah SG, Rashid M, Verma T, et al. Establishing a correlation between RIN and A260/280 along with the multivariate evaluation of factors affecting the quality of RNA in cryopreserved cancer bio­specimen. Cell Tissue Bank. 2019;20(4):489­99. doi:10.1007/S10561­019­09782­7.

5. Meddeb R, Pisareva E, Thierry AR. Guidelines for the Preanalytical Conditions for Analyzing Circulating Cell­ Free DNA. Clin Chem. 2019;65(5):623­33. doi:10.1373/clinchem.2018.298323.

6. Pachulia OV, Illarionov RA, Vashukova ES, et al. Quality management of biosampling and data collection from women at different stages of pregnancy for the search for early biomarkers of preterm birth: predicting errors and risk management. Cardiovascular Therapy and Prevention. 2021;20(8):3107. (In Russ.) doi:10.15829/1728­8800­2021­3107.

7. Pachulia OV, Illarionov RA, Vashukova ES, et al. Bioresource collection of biosamples from pregnant women at different gestational ages for the search for early biomarkers of pregnancy complications and potential for its use in research. Cardiovascular Therapy and Prevention. 2022;21(11):3399. (In Russ.) doi:10.15829/1728­8800­2022­3399.

8. Illarionov RA, Kosyakova OV, Vashukova ES, et al. Collection of samples from women at different stages of pregnancy to search for early biomarkers of preterm birth. Cardiovascular Therapy and Prevention. 2020;19(6):2708. (In Russ.) doi:10.15829/1728­8800­2020­2708.

9. Miller SA, Dykes DD, Polesky HF. A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Res. 1988;16(3):1215. doi:10.1093/nar/16.3.1215.

10. Laemmli UK. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature. 1970;227(5259):680­5. doi:10.1038/227680a0.

11. Tang R, Han C, Yin R, et al. Quality Control of DNA Extracted from All­ Cell Pellets After Cryopreservation for More Than 10 Years. Biopreserv Biobank. 2022;20(3):211­6. doi:10.1089/bio.2021.0052.

12. Dong L, Yoshizawa J, Li X. Nucleic Acid Isolation and Quality Control. Methods Mol Biol. 2019;1897:325­43. doi:10.1007/978­1­49398935­5_28.

13. Esteva­ Socias M, Artiga MJ, Bahamonde O, et al. In search of an evidence­ based strategy for quality assessment of human tissue samples: report of the tissue Biospecimen Research Working Group of the Spanish Biobank Network. J Transl Med. 2019;17(1):370. doi:10.1186/s12967­019­2124­8.

14. Liu Y, Gao H, Hu Y, Ding J, Ge M, Ye Q. Quality Control System in an Obstetrics and Gynecology Disease Biobank. Biopreserv Biobank. 2019;17(1):27­38. doi:10.1089/bio.2018.0056.

15. Brisco MJ, Latham S, Bartley PA, Morley AA. Incorporation of measurement of DNA integrity into qPCR assays. Biotechniques. 2010;49(6):893­7. doi:10.2144/000113567.

16. Kondratskaya VA, Pokrovskaya MS, Doludin YuV, et al. Influence of preanalytical variables on the quality of cell­free DNA. Biobanking of cell­free DNA material. Cardiovascular Therapy and Prevention. 2021;20(8):3114. (In Russ.) doi:10.15829/1728­88002021­3114.

17. Craciun L, Spinette SA, Rassy M, et al. Tumor Banks: A Quality Control Scheme Proposal. Front Med (Lausanne). 2019;6:225. doi:10.3389/fmed.2019.00225.

18. Shen Q, Björkesten J, Galli J, et al. Strong impact on plasma protein profiles by precentrifugation delay but not by repeated freeze­thaw cycles, as analyzed using multiplex proximity extension assays. Clin Chem Lab Med. 2018;56(4):582­94. doi:10.1515/cclm­2017­0648.


Supplementary files

What is already known about the subject?

  • Biobanks are a modern platform that provides access to high-quality biomaterial, standardized at all sampling stages.
  • Integral criteria characterizing biospecimens are "high quality" and the presence of related data.

What might this study add?

  • When creating and maintaining a bioresource collection, standard operating procedures must be followed.
  • Periodic inventory is required to assess the quality of biosamples.

Review

For citations:


Maltseva A.R., Illarionov R.A., Vashukova E.S., Pachulia O.V., Postnikova T.B., Velizhanina M.E., Rubel A.A., Nasykhova Yu.A., Bespalova O.N., Glotov A.S. Inventory and quality control of biosample collection from pregnant women at different gestational ages to search for early biomarkers of pregnancy complications. Cardiovascular Therapy and Prevention. 2023;22(11):3740. (In Russ.) https://doi.org/10.15829/1728-8800-2023-3740

Views: 428


Creative Commons License
This work is licensed under a Creative Commons Attribution 4.0 License.


ISSN 1728-8800 (Print)
ISSN 2619-0125 (Online)