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Validation of genetic risk scores for type 2 diabetes on a Russian population sample from the biobank of the National Medical Research Center for Therapy and Preventive Medicine

https://doi.org/10.15829/1728-8800-20233746

EDN: VADXMO

Abstract

Aim. To validate and evaluate the accuracy of 14 genetic risk scores (GRSs) for type 2 diabetes (T2D), created earlier in other countries, using a Russian population sample from the biobank of the National Medical Research Center for Therapy and Preventive Medicine.

Material and methods. For genetic analysis, next generation sequencing data was used on a sample from the Russian population (n=1165) based on the biobank collection. The study included 14 GRSs associated with T2D.

Results. The study demonstrated that the predictive power of 12 out of 14 GRSs for T2D was replicated in the Russian population. As quality metrics, we used the area under the ROC curve, which for models including only GRS varied from 54,49 to 59,46%, and for models including GRS, sex and age — from 77,56 to 78,75%.

Conclusion. For the first time in Russia, a study of 14 T2D GRSs developed on other populations was conducted. Twelve GRSs have been validated and can be used in the future to improve risk prediction and prevention of T2D in Russia.

About the Authors

A. V. Kiseleva
National Medical Research Center for Therapy and Preventive Medicine
Russian Federation

Moscow



A. G. Soplenkova
National Medical Research Center for Therapy and Preventive Medicine
Russian Federation

Moscow



V. A. Kutsenko
National Medical Research Center for Therapy and Preventive Medicine; Lomonosov Moscow State University
Russian Federation

Moscow



E. A. Sotnikova
National Medical Research Center for Therapy and Preventive Medicine
Russian Federation

Moscow



Yu. V. Vyatkin
National Medical Research Center for Therapy and Preventive Medicine; Lomonosov Moscow State University
Russian Federation

Moscow



А. A. Zharikova
National Medical Research Center for Therapy and Preventive Medicine; Lomonosov Moscow State University
Russian Federation

Moscow



A. I. Ershova
National Medical Research Center for Therapy and Preventive Medicine
Russian Federation

Moscow



M. Zaichenoka
Moscow Institute of Physics and Technology
Russian Federation

Moscow Oblast, Dolgoprudny



V. E. Ramensky
National Medical Research Center for Therapy and Preventive Medicine; Lomonosov Moscow State University
Russian Federation

Moscow



O. P. Skirko
National Medical Research Center for Therapy and Preventive Medicine
Russian Federation

Moscow



S. А. Smetnev
National Medical Research Center for Therapy and Preventive Medicine
Russian Federation

Moscow



O. V. Kopylova
National Medical Research Center for Therapy and Preventive Medicine
Russian Federation

Moscow



А. S. Limonova
National Medical Research Center for Therapy and Preventive Medicine
Russian Federation

Moscow



A. V. Blokhina
National Medical Research Center for Therapy and Preventive Medicine
Russian Federation

Moscow



M. S. Pokrovskaya
National Medical Research Center for Therapy and Preventive Medicine
Russian Federation

Moscow



S. A. Shalnova
National Medical Research Center for Therapy and Preventive Medicine
Russian Federation

Moscow



A. N. Meshkov
National Medical Research Center for Therapy and Preventive Medicine
Russian Federation

Moscow



O. M. Drapkina
National Medical Research Center for Therapy and Preventive Medicine
Russian Federation

Moscow



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Supplementary files

What is already known about the subject?

  • To assess a person's genetic predisposition to a par­ticular trait or disease, genetic risk scores (GRS) are used.
  • Most GRSs explain only a small portion of trait variance, but they are a robust measure of a person's genetic susceptibility to disease.

What might this study add?

  • For the first time in Russia, 14 GRSs for type 2 dia­betes, developed on European populations, were validated.
  • Of the 14 GHRs for type 2 diabetes, 12 were sig­nificantly associated with type 2 diabetes in the Russian population.

Review

For citations:


Kiseleva A.V., Soplenkova A.G., Kutsenko V.A., Sotnikova E.A., Vyatkin Yu.V., Zharikova А.A., Ershova A.I., Zaichenoka M., Ramensky V.E., Skirko O.P., Smetnev S.А., Kopylova O.V., Limonova А.S., Blokhina A.V., Pokrovskaya M.S., Shalnova S.A., Meshkov A.N., Drapkina O.M. Validation of genetic risk scores for type 2 diabetes on a Russian population sample from the biobank of the National Medical Research Center for Therapy and Preventive Medicine. Cardiovascular Therapy and Prevention. 2023;22(11):3746. (In Russ.) https://doi.org/10.15829/1728-8800-20233746. EDN: VADXMO

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ISSN 1728-8800 (Print)
ISSN 2619-0125 (Online)